4BFZ

Crystal structure of Mycobacterium tuberculosis PanK in complex with a biaryl inhibitory compound (2b) and phosphate

Structural Biology Knowledgebase: 4BFZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BFZ

Classification: TRANSFERASE

Total Structure Weight: 74141.17

Macromolecule Entities
Molecule Chains Length Organism Details
PANTOTHENATE KINASE A, B 318 Mycobacterium tuberculosis EC#: 2.7.1.33 IUBMB
Gene Name(s): coaA Rv1092c MTV017.45c

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZVZ
Query on ZVZ

A, B 2-[4-(4-CYANOPHENYL)-3-{[4-(PYRIDIN-2-YL)PIPERAZIN- 1-YL]METHYL}PHENOXY]-N-METHYLACETAMIDE
C26 H27 N5 O2
MATAFJDAEJJYTE-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ZVZ N/A in BindingDB
IC50: 550 nM  BindingMOAD
IC50: 550 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.205
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 88.46 α = 90.00
b = 148.28 β = 90.00
c = 63.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-22
  • Released Date: 2013-05-15
  • Deposition author(s): Bjorkelid, C., Bergfors, T., Jones, T.A.

Revision History

  • 2013-07-10
    Type: Citation | Details: JRNL
  • 2013-05-22
    Type: Citation | Details: JRNL