4AEN

HLA-DR1 with covalently linked CLIP106-120 in reversed orientation

Structural Biology Knowledgebase: 4AEN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 4AEN

Classification: IMMUNE SYSTEM

Total Structure Weight: 48305.68

Macromolecule Entities
Molecule Chains Length Organism Details
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN A 207 Homo sapiens Fragment: EXTRACELLULAR DOMAIN, RESIDUES 26-217
Gene Name(s): HLA-DRA Gene View HLA-DRA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-1 BETA CHAIN B 199 Homo sapiens Fragment: EXTRACELLULAR DOMAIN, RESIDUES 30-227
Gene Name(s): HLA-DRB1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN GAMMA CHAIN C 16 Homo sapiens Fragment: RESIDUES 106-120
Gene Name(s): CD74 Gene View DHLAG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.183
  • Space Group: C 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.20 α = 90.00
b = 145.11 β = 90.00
c = 108.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-11
  • Released Date: 2012-08-01
  • Deposition author(s): Schlundt, A., Guenther, S., Sticht, J., Wieczorek, M., Roske, Y., Heinemann, U., Freund, C.

Revision History

  • 2012-10-10
    Type: Citation | Details: JRNL