4ACR

Crystal structure of N-glycosylated, C-terminally truncated human glypican-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.251

Literature

Macromolecules
Sequence Display for 4ACR

Classification: MEMBRANE PROTEIN

Total Structure Weight: 216186.67

Macromolecule Entities
Molecule Chains Length Organism Details
GLYPICAN-1 A, B, C, D 478 Homo sapiens Fragment: UNP RESIDUES 24-479
Details: N-GLYCOSYLATED AT RESIDUES 79 AND 116
Gene Name(s): GPC1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.251
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 47.17 α = 90.00
b = 168.63 β = 94.59
c = 147.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-17
  • Released Date: 2012-02-22
  • Deposition author(s): Svensson, G., Awad, W., Mani, K., Logan, D.T.

Revision History

  • 2012-05-02
    Type: Other