4A5W

Crystal structure of C5b6

Structural Biology Knowledgebase: 4A5W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.255

Literature

Macromolecules
Sequence Display for 4A5W

Classification: IMMUNE SYSTEM

Total Structure Weight: 281880.50

Macromolecule Entities
Molecule Chains Length Organism Details
COMPLEMENT C5 A 1580 Homo sapiens Gene Name(s): C5 Gene View CPAMD4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
COMPLEMENT COMPONENT C6 B 913 Homo sapiens Gene Name(s): C6 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

B ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.255
  • Space Group: I 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 154.22 α = 90.00
b = 230.75 β = 90.00
c = 269.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-28
  • Released Date: 2012-03-14
  • Deposition author(s): Hadders, M.A., Bubeck, D., Forneris, F., Pangburn, M., Llorca, O., Lea, S.M., Gros, P.

Revision History

  • 2012-10-31
    Type: Citation | Details: JRNL
  • 2012-05-09
    Type: Other | Details: Citation