4YYC

Crystal structure of trimethylamine methyltransferase from Sinorhizobium meliloti in complex with unknown ligand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.165
  • R-Value Work: 0.139

Literature

Macromolecules
Sequence Display for 4YYC

Classification: TRANSFERASE

Total Structure Weight: 57907.03

Macromolecule Entities
Molecule Chains Length Organism Details
Putative trimethylamine methyltransferase A 525 Sinorhizobium meliloti Gene Name(s): mttB SMc04330
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNL
Query on UNL

Unknown ligand
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 89.16 α = 90.00
b = 60.03 β = 90.00
c = 88.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-03-23
  • Released Date: 2015-04-08
  • Deposition author(s): Shabalin, I.G., Porebski, P.J., Gasiorowska, O.A., Handing, K.B., Niedzialkowska, E., Cymborowski, M.T., Cooper, D.R., Stead, M., Hammonds, J., Ahmed, M., Bonanno, J., Seidel, R., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

Revision History

  • Version 1_0: 2015-04-08

    Type: Initial release

  • Version 1_1: 2016-03-30

    Type: Other

  • Version 1_2: 2016-06-01

    Type: Database references

  • Version 1_3: 2017-09-27

    Type: Author supporting evidence, Database references, Derived calculations, Refinement description