4XV6

CcP gateless cavity

Structural Biology Knowledgebase: 4XV6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.136
  • R-Value Work: 0.104

Literature

Macromolecules
Sequence Display for 4XV6

Classification: OXIDOREDUCTASE

Total Structure Weight: 33740.30

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome c peroxidase, mitochondrial A 289 Saccharomyces cerevisiae EC#: 1.11.1.5 IUBMB
Mutation: T53I, D152G, P190G, W191G, ΔA260
Gene Name(s): CCP1 CCP CPO Gene View YKR066C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

A 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.136
  • R-Value Work: 0.104
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 51.48 α = 90.00
b = 76.52 β = 90.00
c = 107.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-01-26
  • Released Date: 2015-02-18
  • Deposition author(s): Fischer, M., Fraser, J.S.

Revision History

  • 2015-07-29
    Type: Citation | Details: Citation
  • 2015-06-24
    Type: Citation | Details: Citation