4XI1

Crystal structure of U-box 2 of LubX / LegU2 / Lpp2887 from Legionella pneumophila str. Paris, wild-type


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.162

Literature

Macromolecules
Sequence Display for 4XI1

Classification: LIGASE

Total Structure Weight: 36077.35

Macromolecule Entities
Molecule Chains Length Organism Details
E3 ubiquitin-protein ligase LubX A, B, C 101 Legionella pneumophila EC#: 6.3.2 IUBMB
Fragment: UNP residues 102-202
Gene Name(s): lubX lpp2887
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEZ
Query on HEZ

A, B, C HEXANE-1,6-DIOL
C6 H14 O2
XXMIOPMDWAUFGU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.162
  • Space Group: P 4 3 2

Unit Cell:

Length (Å) Angle (°)
a = 160.23 α = 90.00
b = 160.23 β = 90.00
c = 160.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-01-06
  • Released Date: 2015-01-21
  • Deposition author(s): Stogios, P.J., Quaile, T., Skarina, T., Cuff, M., Di Leo, R., Yim, V., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
  • Previous versions: 4WZ1

Revision History

  • 2015-08-26
    Type: Citation | Details: Citation
  • 2015-07-29
    Type: Other | Details: Other