4WZJ

Spliceosomal U4 snRNP core domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 4WZJ

Classification: SPLICING

Total Structure Weight: 1229008.00


Macromolecule Entities
Molecule Chains Length Organism Details
Small nuclear ribonucleoprotein Sm D3 A, AA, AAA..., AAAA, H, HH, HHH, HHHH, O, OO, OOO, OOOOA, AA, AAA, AAAA, H, HH, HHH, HHHH, O, OO, OOO, OOOO 125 Homo sapiens Details: engineered, co-expressed with SM B
Gene Name(s): SNRPD3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Small nuclear ribonucleoprotein-associated proteins B and B' B, BB, BBB..., BBBB, I, II, III, IIII, P, PP, PPP, PPPPB, BB, BBB, BBBB, I, II, III, IIII, P, PP, PPP, PPPP 95 Homo sapiens Details: engineered; residues 1-95 of sequence expressed, co-expressed with SM D3
Gene Name(s): SNRPB Gene View COD SNRPB1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Small nuclear ribonucleoprotein Sm D1 C, CC, CCC..., CCCC, J, JJ, JJJ, JJJJ, Q, QQ, QQQ, QQQQC, CC, CCC, CCCC, J, JJ, JJJ, JJJJ, Q, QQ, QQQ, QQQQ 118 Homo sapiens Details: engineered, co-expressed with SM D2
Gene Name(s): SNRPD1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Small nuclear ribonucleoprotein Sm D2 D, DD, DDD..., DDDD, K, KK, KKK, KKKK, R, RR, RRR, RRRRD, DD, DDD, DDDD, K, KK, KKK, KKKK, R, RR, RRR, RRRR 118 Homo sapiens Details: engineered, co-expressed with SM D1
Gene Name(s): SNRPD2 Gene View SNRPD1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Small nuclear ribonucleoprotein F F, FF, FFF..., FFFF, M, MM, MMM, MMMM, T, TT, TTT, TTTTF, FF, FFF, FFFF, M, MM, MMM, MMMM, T, TT, TTT, TTTT 86 Homo sapiens Details: engineered, co-expressed with SM E and SM G
Gene Name(s): SNRPF Gene View PBSCF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Small nuclear ribonucleoprotein E E, EE, EEE..., EEEE, L, LL, LLL, LLLL, S, SS, SSS, SSSSE, EE, EEE, EEEE, L, LL, LLL, LLLL, S, SS, SSS, SSSS 92 Homo sapiens Details: engineered, co-expressed with SM F and SM G
Gene Name(s): SNRPE Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Small nuclear ribonucleoprotein G G, GG, GGG..., GGGG, N, NN, NNN, NNNN, U, UU, UUU, UUUUG, GG, GGG, GGGG, N, NN, NNN, NNNN, U, UU, UUU, UUUU 76 Homo sapiens Details: engineered, co-expressed with SM E and SM F
Gene Name(s): SNRPG Gene View PBSCG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. V, VV, VVV... , VVVV, X, XX, XXX, XXXX, Y, YY, YYY, YYYY V, VV, VVV, VVVV, X, XX, XXX, XXXX, Y, YY, YYY, YYYY 68 Homo sapiens In vitro transcription with T7 RNA polymerase.


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.177
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 248.01 α = 90.00
b = 248.01 β = 90.00
c = 251.94 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2014-11-19
  • Released Date: 2015-01-14
  • Deposition author(s): Leung, A.K.W., Nagai, K., Li, J.
  • Previous versions: 2Y9A 2Y9B 2Y9C 2Y9D 4V5U

Revision History

  • Version 1_0: 2015-01-14

    Type: Initial release

  • Version 1_1: 2015-04-08

    Type: Database references, Structure summary

  • Version 1_2: 2016-01-13

    Type: Database references