4V99

The Crystallographic Structure of Panicum Mosaic Virus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.251

Literature

Macromolecules
Sequence Display for 4V99

Classification: VIRUS / RNA

Total Structure Weight: 10135475.00


Macromolecule Entities
Molecule Chains Length Organism Details
Capsid protein A1, A4, A5..., A6, AA, AB, AC, AF, AG, AH, AK, AL, AM, AP, AQ, AR, AU, AV, AW, AZ, Aa, Ab, Ae, Af, Ag, Aj, Ak, Al, Ao, Ap, Aq, At, Au, Av, Ay, Az, B1, B4, B5, B6, BA, BB, BC, BF, BG, BH, BK, BL, BM, BP, BQ, BR, BU, BV, BW, BZ, Ba, Bb, Be, Bf, Bg, Bj, Bk, Bl, Bo, Bp, Bq, Bt, Bu, Bv, By, Bz, C1, C4, C5, C6, CA, CB, CC, CF, CG, CH, CK, CL, CM, CP, CQ, CR, CU, CV, CW, CZ, Ca, Cb, Ce, Cf, Cg, Cj, Ck, Cl, Co, Cp, Cq, Ct, Cu, Cv, Cy, Cz, D1, D4, D5, D6, DA, DB, DC, DF, DG, DH, DK, DL, DM, DP, DQ, DR, DU, DV, DW, DZ, Da, Db, De, Df, Dg, Dj, Dk, Dl, Do, Dp, Dq, Dt, Du, Dv, Dy, Dz, E1, E4, E5, E6, EA, EB, EC, EF, EG, EH, EK, EL, EM, EP, EQ, ER, EU, EV, EW, EZ, Ea, Eb, Ee, Ef, Eg, Ej, Ek, El, Eo, Ep, Eq, Et, Eu, Ev, Ey, Ez, F1, F4, F5, F6, FA, FB, FC, FF, FG, FH, FK, FL, FM, FP, FQ, FR, FU, FV, FW, FZ, Fa, Fb, Fe, Ff, Fg, Fj, Fk, Fl, Fo, Fp, Fq, Ft, Fu, Fv, Fy, Fz, G1, G4, G5, G6, GA, GB, GC, GF, GG, GH, GK, GL, GM, GP, GQ, GR, GU, GV, GW, GZ, Ga, Gb, Ge, Gf, Gg, Gj, Gk, Gl, Go, Gp, Gq, Gt, Gu, Gv, Gy, Gz, H1, H4, H5, H6, HA, HB, HC, HF, HG, HH, HK, HL, HM, HP, HQ, HR, HU, HV, HW, HZ, Ha, Hb, He, Hf, Hg, Hj, Hk, Hl, Ho, Hp, Hq, Ht, Hu, Hv, Hy, Hz, I1, I4, I5, I6, IA, IB, IC, IF, IG, IH, IK, IL, IM, IP, IQ, IR, IU, IV, IW, IZ, Ia, Ib, Ie, If, Ig, Ij, Ik, Il, Io, Ip, Iq, It, Iu, Iv, Iy, Iz, J1, J4, J5, J6, JA, JB, JC, JF, JG, JH, JK, JL, JM, JP, JQ, JR, JU, JV, JW, JZ, Ja, Jb, Je, Jf, Jg, Jj, Jk, Jl, Jo, Jp, Jq, Jt, Ju, Jv, Jy, JzA1, A4, A5, A6, AA, AB, AC, AF, AG, AH, AK, AL, AM, AP, AQ, AR, AU, AV, AW, AZ, Aa, Ab, Ae, Af, Ag, Aj, Ak, Al, Ao, Ap, Aq, At, Au, Av, Ay, Az, B1, B4, B5, B6, BA, BB, BC, BF, BG, BH, BK, BL, BM, BP, BQ, BR, BU, BV, BW, BZ, Ba, Bb, Be, Bf, Bg, Bj, Bk, Bl, Bo, Bp, Bq, Bt, Bu, Bv, By, Bz, C1, C4, C5, C6, CA, CB, CC, CF, CG, CH, CK, CL, CM, CP, CQ, CR, CU, CV, CW, CZ, Ca, Cb, Ce, Cf, Cg, Cj, Ck, Cl, Co, Cp, Cq, Ct, Cu, Cv, Cy, Cz, D1, D4, D5, D6, DA, DB, DC, DF, DG, DH, DK, DL, DM, DP, DQ, DR, DU, DV, DW, DZ, Da, Db, De, Df, Dg, Dj, Dk, Dl, Do, Dp, Dq, Dt, Du, Dv, Dy, Dz, E1, E4, E5, E6, EA, EB, EC, EF, EG, EH, EK, EL, EM, EP, EQ, ER, EU, EV, EW, EZ, Ea, Eb, Ee, Ef, Eg, Ej, Ek, El, Eo, Ep, Eq, Et, Eu, Ev, Ey, Ez, F1, F4, F5, F6, FA, FB, FC, FF, FG, FH, FK, FL, FM, FP, FQ, FR, FU, FV, FW, FZ, Fa, Fb, Fe, Ff, Fg, Fj, Fk, Fl, Fo, Fp, Fq, Ft, Fu, Fv, Fy, Fz, G1, G4, G5, G6, GA, GB, GC, GF, GG, GH, GK, GL, GM, GP, GQ, GR, GU, GV, GW, GZ, Ga, Gb, Ge, Gf, Gg, Gj, Gk, Gl, Go, Gp, Gq, Gt, Gu, Gv, Gy, Gz, H1, H4, H5, H6, HA, HB, HC, HF, HG, HH, HK, HL, HM, HP, HQ, HR, HU, HV, HW, HZ, Ha, Hb, He, Hf, Hg, Hj, Hk, Hl, Ho, Hp, Hq, Ht, Hu, Hv, Hy, Hz, I1, I4, I5, I6, IA, IB, IC, IF, IG, IH, IK, IL, IM, IP, IQ, IR, IU, IV, IW, IZ, Ia, Ib, Ie, If, Ig, Ij, Ik, Il, Io, Ip, Iq, It, Iu, Iv, Iy, Iz, J1, J4, J5, J6, JA, JB, JC, JF, JG, JH, JK, JL, JM, JP, JQ, JR, JU, JV, JW, JZ, Ja, Jb, Je, Jf, Jg, Jj, Jk, Jl, Jo, Jp, Jq, Jt, Ju, Jv, Jy, Jz 242 Panicum mosaic virus EC#: 2.3.1.n3 IUBMB
Gene Name(s): ORF3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3' A2, A7, AD... , AI, AN, AS, AX, Ac, Ah, Am, Ar, Aw, B2, B7, BD, BI, BN, BS, BX, Bc, Bh, Bm, Br, Bw, C2, C7, CD, CI, CN, CS, CX, Cc, Ch, Cm, Cr, Cw, D2, D7, DD, DI, DN, DS, DX, Dc, Dh, Dm, Dr, Dw, E2, E7, ED, EI, EN, ES, EX, Ec, Eh, Em, Er, Ew, F2, F7, FD, FI, FN, FS, FX, Fc, Fh, Fm, Fr, Fw, G2, G7, GD, GI, GN, GS, GX, Gc, Gh, Gm, Gr, Gw, H2, H7, HD, HI, HN, HS, HX, Hc, Hh, Hm, Hr, Hw, I2, I7, ID, II, IN, IS, IX, Ic, Ih, Im, Ir, Iw, J2, J7, JD, JI, JN, JS, JX, Jc, Jh, Jm, Jr, Jw A2, A7, AD, AI, AN, AS, AX, Ac, Ah, Am, Ar, Aw, B2, B7, BD, BI, BN, BS, BX, Bc, Bh, Bm, Br, Bw, C2, C7, CD, CI, CN, CS, CX, Cc, Ch, Cm, Cr, Cw, D2, D7, DD, DI, DN, DS, DX, Dc, Dh, Dm, Dr, Dw, E2, E7, ED, EI, EN, ES, EX, Ec, Eh, Em, Er, Ew, F2, F7, FD, FI, FN, FS, FX, Fc, Fh, Fm, Fr, Fw, G2, G7, GD, GI, GN, GS, GX, Gc, Gh, Gm, Gr, Gw, H2, H7, HD, HI, HN, HS, HX, Hc, Hh, Hm, Hr, Hw, I2, I7, ID, II, IN, IS, IX, Ic, Ih, Im, Ir, Iw, J2, J7, JD, JI, JN, JS, JX, Jc, Jh, Jm, Jr, Jw 17 Panicum mosaic virus arbitrary RNA hairpin

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A1, A4, AA, AF, AL, AP, AU, AZ, Af, Aj, Ao, At, B5, BB, BF, BK, BQ, BU, BZ, Be, Bk, Bo, Bt, By, C4, CA, CG, CK, CP, CU, CZ, Ce, Cj, Co, Ct, Cy, D4, DA, DF, DK, DP, DU, DZ, Df, Dj, Do, Dt, Dy, E4, EC, EF, EK, EP, EU, EZ, Ee, Ek, Eo, Et, Ey, F1, F4, FA, FF, FK, FP, FU, FZ, Fe, Fk, Fo, Ft, G1, G4, GA, GF, GK, GP, GU, GZ, Ge, Gj, Go, Gt, H4, HA, HF, HK, HP, HU, HZ, Hg, Hj, Ho, Ht, Hy, I1, I4, IA, IF, IK, IR, IU, IZ, If, Ij, Io, It, J4, JA, JF, JL, JP, JU, JZ, Je, Jj, Jo, Jt, Jy CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.251
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 411.74 α = 90.00
b = 403.90 β = 89.65
c = 412.46 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

Revision History

  • 2014-12-10
    Type: Other | Details: Move to main ftp archive