4V5Z

Structure of a mammalian 80S ribosome obtained by docking homology models of the RNA and proteins into an 8.7 A cryo-EM map


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.7 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 4V5Z

Classification: RIBOSOMAL PROTEIN / RNA

Total Structure Weight: 2902274.50


Macromolecule Entities
Molecule Chains Length Organism Details
40S Ribosomal protein RACK1 Aa 317 Canis lupus
40S Ribosomal protein SA Ab 295 Canis lupus
40S Ribosomal protein S3e Ac 243 Canis lupus
40S Ribosomal protein S9e Ad 209 Canis lupus
40S Ribosomal protein S2e Ae 179 Canis lupus
40S Ribosomal protein S5e Ag 204 Canis lupus
40S Ribosomal protein S15ae Ah 130 Canis lupus
40S Ribosomal protein S16e Ai 146 Canis lupus
40S Ribosomal protein S20e Aj 119 Canis lupus
40S Ribosomal protein S14e Ak 151 Canis lupus
40S Ribosomal protein S23e Al 143 Canis lupus
40S Ribosomal protein S18e Am 152 Canis lupus
40S Ribosomal protein S29e An 56 Canis lupus
40S Ribosomal protein S13e Ao 89 Canis lupus
40S Ribosomal protein S11e Aq 158 Canis lupus
40S Ribosomal protein S15e As 145 Canis lupus
60S Ribosomal protein L8 Ba 257 Canis lupus
60S Ribosomal protein L3 Bb 403 Canis lupus
60S Ribosomal protein L4 Bc 421 Canis lupus
60S Ribosomal protein L11 Bd 178 Canis lupus
60S Ribosomal protein L9 Be 192 Canis lupus
60S Ribosomal protein L7a Bf 266 Canis lupus
60S acidic ribosomal protein P0 Bg 317 Canis lupus
60S Ribosomal protein L10 Bh 214 Canis lupus
60S Ribosomal protein L12 Bi 165 Canis lupus
60S ribosomal protein L13a Bj 203 Canis lupus
60S Ribosomal protein L23 Bk 140 Canis lupus
60S Ribosomal protein L27a Bl 148 Canis lupus
60S Ribosomal protein L15e Bm 204 Canis lupus
60S Ribosomal protein L5 Bn 297 Canis lupus
60S Ribosomal protein L18 Bo 188 Canis lupus
60S Ribosomal protein L19 Bp 196 Canis lupus
60S Ribosomal protein L19 B7 13 Canis lupus Details: C-terminal extension
60S Ribosomal protein L21 Bq 160 Canis lupus
60S Ribosomal protein L17 Br 184 Canis lupus
60S Ribosomal protein L23a Bs 156 Canis lupus
60S Ribosomal protein L26 Bt 145 Canis lupus
60S Ribosomal protein L24 Bu 157 Canis lupus
60S Ribosomal protein L35 Bv 123 Canis lupus
60S Ribosomal protein L35 B8 10 Canis lupus Details: C-terminal extension
60S Ribosomal protein L7 Bw 270 Canis lupus
60S Ribosomal protein L31 Bx 125 Canis lupus
60S Ribosomal protein L32 By 135 Canis lupus
60S Ribosomal protein L32 B9 58 Canis lupus Details: C-terminal extension
60S Ribosomal protein L37a Bz 92 Canis lupus
60S Ribosomal protein L37e B2 97 Canis lupus
60S Ribosomal protein L39e B3 51 Canis lupus
60S Ribosomal protein L44e B4 106 Canis lupus
60S Ribosomal protein L10a B5 212 Canis lupus
60S Ribosomal protein L30e B6 115 Canis lupus
Macromolecule Entities
Molecule Chains Length Organism Details
18S Ribosomal RNA AA 1563 Canis lupus
RNA Expansion segment ES3 AB 35 Canis lupus
RNA Expansion segment ES4 AC 32 Canis lupus
RNA Expansion segment ES6 part I AD 42 Canis lupus
RNA Expansion segment ES6 part II AE 32 Canis lupus
RNA Expansion segment ES9 AF 31 Canis lupus
RNA helix AG 14 Canis lupus
RNA helix AH 41 Canis lupus
5.8S Ribosomal RNA B1 123 Canis lupus
28S Ribosomal RNA B0 2903 Canis lupus
RNA Expansion segment ES3 BA 21 Canis lupus Expansion segment in 5.8S
RNA Expansion segment ES4 BB 27 Canis lupus Expansion segment at the 3' end of 5.8S and 5' end of 28S
RNA Expansion segment ES5 BC 17 Canis lupus
RNA Expansion segment ES7 part I BD 16 Canis lupus
RNA Expansion segment ES7 part II BE 54 Canis lupus
RNA Expansion segment ES7 part III BF 120 Canis lupus
RNA Expansion segment ES9 BG 48 Canis lupus
RNA Expansion segment ES12 BH 25 Canis lupus
RNA Expansion segment ES15 part I BI 72 Canis lupus
RNA Expansion segment ES15 part II BJ 30 Canis lupus
RNA Expansion segment ES19 BK 26 Canis lupus
RNA Expansion segment ES20 BL 20 Canis lupus
RNA Expansion segment ES24 BM 19 Canis lupus
RNA Expansion segment ES27 BN 78 Canis lupus
RNA Expansion segment ES30 BO 20 Canis lupus
RNA Expansion segment ES31 part I BP 15 Canis lupus
RNA Expansion segment ES31 part II BQ 30 Canis lupus
RNA Expansion segment ES39 part I BR 30 Canis lupus
RNA Expansion segment ES39 part II BS 38 Canis lupus
RNA Expansion segment ES39 part III BT 30 Canis lupus
RNA Expansion segment ES41 BU 16 Canis lupus
RNA Expansion segment ES9 part2 BV 22 Canis lupus
RNA Expansion segment ES10 BW 16 Canis lupus
RNA helices BX 113 Canis lupus
5S Ribosomal RNA BY 115 Canis lupus
E site t-RNA BZ 72 Canis lupus


Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.7 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2008-03-27
  • Released Date: 2014-07-09
  • Deposition author(s): Chandramouli, P., Akey, C.W.
  • Previous versions: 2ZKQ 2ZKR

Revision History

  • 2014-12-10
    Type: Other
  • 2015-03-25
    Type: Other