4V4P

Crystal structure of 70S ribosome with thrS operator and tRNAs.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.5 Å
  • R-Value Free: 0.356
  • R-Value Work: 0.307

Literature

Macromolecules
Sequence Display for 4V4P

Classification: RIBOSOME

Total Structure Weight: 2308735.75


Macromolecule Entities
Molecule Chains Length Organism Details
50S ribosomal protein L1 AC 228 Thermus thermophilus Gene Name(s): rplA rpl1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L2 AD 178 Thermus thermophilus Gene Name(s): rplB TTHA1689
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L3 AE 338 Thermus thermophilus
50S ribosomal protein L4 AF 246 Thermus thermophilus
50S ribosomal protein L5 AG 176 Thermus thermophilus
50S ribosomal protein L6 AH 177 Thermus thermophilus
50S ribosomal protein L7/L12 AI, AJ 128 Thermus thermophilus
50S ribosomal protein L9 AK 149 Thermus thermophilus
50S ribosomal protein L11 AL 141 Thermus thermophilus
50S ribosomal protein L13 AM 145 Thermus thermophilus
50S ribosomal protein L14 AN 122 Thermus thermophilus
50S ribosomal protein L15 AO 164 Thermus thermophilus
50S ribosomal protein L16 AP 138 Thermus thermophilus
50S ribosomal protein L18 AQ 186 Thermus thermophilus
50S ribosomal protein L19 AR 66 Thermus thermophilus
50S ribosomal protein L22 AS 113 Thermus thermophilus Gene Name(s): rplV rpl22
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L23 AT 84 Thermus thermophilus
50S ribosomal protein L24 AU 119 Thermus thermophilus
50S general stress protein CTC (L25) AV 253 Thermus thermophilus
50S ribosomal protein L29 AW 70 Thermus thermophilus
50S ribosomal protein L30 AX 60 Thermus thermophilus Gene Name(s): rpmD rpl30
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L17 A0 118 Thermus thermophilus Gene Name(s): rplQ rpl17 TTHA1663
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L20 A1 118 Thermus thermophilus
50S ribosomal protein L21 A2 100 Thermus thermophilus
50S ribosomal protein L27 A3 91 Thermus thermophilus
50S ribosomal protein L31 A4 73 Thermus thermophilus
50S ribosomal protein L32 A5 60 Thermus thermophilus
50S ribosomal protein L33 A6 82 Thermus thermophilus
50S ribosomal protein L34 A7 47 Thermus thermophilus
50S ribosomal protein L35 A8 64 Thermus thermophilus
50S ribosomal protein L36 A9 36 Thermus thermophilus
30S ribosomal protein S2 BE 256 Thermus thermophilus Gene Name(s): rpsB rps2 TTHA0861
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S3 BF 239 Thermus thermophilus Gene Name(s): rpsC rps3 TTHA1686
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S4 BG 209 Thermus thermophilus Gene Name(s): rpsD rps4 TTHA1665
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S5 BH 162 Thermus thermophilus Gene Name(s): rpsE TTHA1675
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S6 BI 101 Thermus thermophilus Gene Name(s): rpsF TTHA0245
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S7 BJ 156 Thermus thermophilus Gene Name(s): rpsG rps7 TTHA1696
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S8 BK 138 Thermus thermophilus Mutation: E25D, K37R, E52D, I61V, H62Y, K81H, R88K, P115S
Gene Name(s): rpsH TTHA1678
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S9 BL 128 Thermus thermophilus Gene Name(s): rpsI rps9 TTHA1464
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S10 BM 105 Thermus thermophilus Gene Name(s): rpsJ TTHA1693
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S11 BN 129 Thermus thermophilus Gene Name(s): rpsK rps11 TTHA1666
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S12 BO 135 Thermus thermophilus Gene Name(s): rpsL TTHA1697
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S13 BP 126 Thermus thermophilus Gene Name(s): rpsM rps13 TTHA1667
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S14 BQ 61 Thermus thermophilus Gene Name(s): rpsZ rpsN TTHA1679
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S15 BR 89 Thermus thermophilus Gene Name(s): rpsO TTHA1138
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S16 BS 88 Thermus thermophilus Gene Name(s): rpsP TTHA1035
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S17 BT 105 Thermus thermophilus Mutation: E96Q
Gene Name(s): rpsQ TTHA1683
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S18 BU 88 Thermus thermophilus Gene Name(s): rpsR TTHA0243
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S19 BV 93 Thermus thermophilus Gene Name(s): rpsS TTHA1688
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S20 BW 106 Thermus thermophilus Mutation: I41V
Gene Name(s): rpsT rps20 TTHA1397
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein Thx BX 27 Thermus thermophilus EC#: 4.1.1.3 IUBMB
Gene Name(s): rpsU TTHA1396
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5S ribosomal RNA AB 123 Thermus thermophilus
23S ribosomal RNA AA 2915 Thermus thermophilus
16S rRNA BA 1522 Thermus thermophilus
tRNA Phe (unmodified bases) BB, BC 76 Thermus thermophilus
thrS mRNA operator B1 78 synthetic


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.5 Å
  • R-Value Free: 0.356
  • R-Value Work: 0.307
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 508.64 α = 90.00
b = 508.64 β = 90.00
c = 806.25 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2005-01-19
  • Released Date: 2014-07-09
  • Deposition author(s): Jenner, L., Romby, P., Rees, B., Schulze-Briese, C., Springer, M., Ehresmann, C., Ehresmann, B., Moras, D., Yusupova, G., Yusupov, M.
  • Previous versions: 1YL3 1YL4

Revision History

  • 2014-12-10
    Type: Other