Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2
DOI:10.2210/pdb4un4/pdb   NDB ID: NA3069
4UN4
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna/rna
    Structure Weight: 197781.59
    Molecule: SGRNA
    Polymer: 1 Type: rna Length: 83
    Chains: A
    Organism: synthetic construct
    Molecule: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1
    Polymer: 2 Type: protein Length: 1372
    Chains: B
    EC#: 3.1   
    Mutation: YES
    Organism: Streptococcus pyogenes
    Gene Names: cas9 csn1 SPy_1046
    UniProtKB: Protein Feature View | Search PDB | Q99ZW2  
    Molecule: TARGET DNA STRAND PROXIMAL FRAGMENT
    Polymer: 3 Type: dna Length: 11
    Chains: C
    Organism: synthetic construct
    Molecule: NON-TARGET DNA STRAND
    Polymer: 4 Type: dna Length: 11
    Chains: D
    Organism: synthetic construct
    Molecule: TARGET DNA STRAND DISTAL FRAGMENT
    Polymer: 5 Type: dna Length: 17
    Chains: E
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 2
    Scientific Name: Streptococcus pyogenes   Taxonomy   Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 5
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4UN3   CRYSTAL STRUCTURE OF CAS9 BOUND TO PAM-CONTAINING DNA TARGET 
    4UN5   CRYSTAL STRUCTURE OF CAS9 BOUND TO PAM-CONTAINING DNA TARGET CONTAINING MISMATCHES AT POSITIONS 1-3 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA3069
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Anders, C.,  Niewoehner, O.,  Duerst, A.,  Jinek, M.

    Deposition:   2014-05-25
    Release:   2014-07-23
    Last Modified (REVDAT):   2014-10-01
     
  •   Revision History    Hide
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    2014-10-01
    Citation
    2014-08-13
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.37
    R-Value: 0.219 (obs.)
    R-Free: 0.248
    Space Group: C 1 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 177.78 α = 90.00 
    b = 66.82 β = 111.39 
    c = 186.83 γ = 90.00