4RYA

Crystal structure of abc transporter solute binding protein AVI_3567 from AGROBACTERIUM VITIS S4, TARGET EFI-510645, with bound D-mannitol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.168
  • R-Value Work: 0.132

Literature

Macromolecules
Sequence Display for 4RYA

Classification: TRANSPORT PROTEIN

Total Structure Weight: 46888.63

Macromolecule Entities
Molecule Chains Length Organism Details
ABC transporter substrate binding protein (Sorbitol) A 424 Agrobacterium vitis Gene Name(s): Avi_3567
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MTL
Query on MTL

A D-MANNITOL
C6 H14 O6
FBPFZTCFMRRESA-KVTDHHQDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.168
  • R-Value Work: 0.132
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 59.41 α = 90.00
b = 61.26 β = 104.01
c = 65.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-12-13
  • Released Date: 2014-12-24
  • Deposition author(s): Patskovsky, Y., Toro, R., Bhosle, R., Al Obaidi, N., Morisco, L.L., Wasserman, S.R., Chamala, S., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Lafleur, J., Hillerich, B., Siedel, R.D., Love, J., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (Efi)

Revision History

  • 2014-12-31
    Type: Entry authorship | Details: --