4RV5

The crystal structure of a solute-binding protein from Anabaena variabilis ATCC 29413 in complex with pyruvic acid

Structural Biology Knowledgebase: 4RV5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.04 Å
  • R-Value Free: 0.131
  • R-Value Work: 0.112

Literature

Macromolecules
Sequence Display for 4RV5

Classification: TRANSPORT PROTEIN

Total Structure Weight: 84998.44

Macromolecule Entities
Molecule Chains Length Organism Details
Amino acid/amide ABC transporter substrate-binding protein, HAAT family A, B 395 Anabaena variabilis Gene Name(s): Ava_0465
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PYR
Query on PYR

A, B PYRUVIC ACID
C3 H4 O3
LCTONWCANYUPML-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.04 Å
  • R-Value Free: 0.131
  • R-Value Work: 0.112
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 98.53 α = 90.00
b = 100.59 β = 90.00
c = 150.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-11-24
  • Released Date: 2014-12-10
  • Deposition author(s): Tan, K., Li, H., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2015-01-28
    Type: Entry title | Details: --