4RBO

Crystal structure of a Nanog homeobox (NANOG) from Homo sapiens at 3.30 A resolution

Structural Biology Knowledgebase: 4RBO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.235

Literature

Macromolecules
Sequence Display for 4RBO

Classification: DNA BINDING PROTEIN TRANSCRIPTION / DNA

Total Structure Weight: 31873.73


Macromolecule Entities
Molecule Chains Length Organism Details
Putative homeobox protein NANOGP8 A, D 70 Homo sapiens Fragment: UNP residues 94-162
Gene Name(s): NANOGP8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*GP*CP*CP*CP*AP*TP*TP*CP*AP*AP*G)-3' B, E 12 synthetic
5'-D(*CP*TP*TP*GP*AP*AP*TP*GP*GP*GP*CP*C)-3' C, F 12 synthetic


Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 215.60 α = 90.00
b = 215.60 β = 90.00
c = 42.27 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-09-12
  • Released Date: 2014-10-01
  • Deposition author(s): Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology (STEMCELL)

Revision History

  • 2015-04-29
    Type: Citation | Details: Citation update
  • 2015-04-08
    Type: Citation | Details: Citation update