4R1G

Structure of a putative peptidoglycan glycosyltransferase from Atopobium parvulum in complex with cloxacillin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 4R1G

Classification: TRANSFERASE

Total Structure Weight: 102174.52

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidoglycan glycosyltransferase A, B 482 Atopobium parvulum EC#: 2.4.1.129 IUBMB
Fragment: UNP residues 505-954
Gene Name(s): Apar_1344
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CXU
Query on CXU

A, B CLOXACILLIN (OPEN FORM)
(2R,4S)-2-[(1R)-1-({[3-(2-chlorophenyl)-5- methyl-1,2-oxazol-4-yl]carbonyl}amino)-2- oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4- carboxylic acid (Synonym)
C19 H20 Cl N3 O5 S
DMRXQBXKFQMOBD-ISTRZQFTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.170
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 67.52 α = 90.00
b = 69.89 β = 97.08
c = 114.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-08-05
  • Released Date: 2014-08-27
  • Deposition author(s): Filippova, E.V., Minasov, G., Kiryukhina, O., Clancy, S., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release