4QK4

Crystal structure of human nuclear receptor sf-1 (nr5a1) bound to pip2 at 2.8 a resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 4QK4

Classification: TRANSCRIPTION FACTOR / HORMONE

Total Structure Weight: 30708.59

Macromolecule Entities
Molecule Chains Length Organism Details
Steroidogenic factor 1 A 245 Homo sapiens Fragment: UNP residues 218-461
Mutation: C247S, C412S
Gene Name(s): NR5A1 Gene View AD4BP FTZF1 SF1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha B 14 Homo sapiens Fragment: UNP residues 139-152
Gene Name(s): PPARGC1A Gene View LEM6 PGC1 PGC1A PPARGC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PIK
Query on PIK

A (2S)-3-{[(R)-hydroxy{[(1R,2R,3S,4R,5R,6S)- 2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane- 1,2-diyl dihexadecanoate
PI(4,5)P2 dipalmitoyl (16:0,16:0) (Synonym)
C41 H81 O19 P3
HKWJHKSHEWVOSS-MVLQGUJPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 75.00 α = 90.00
b = 75.00 β = 90.00
c = 138.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-06-05
  • Released Date: 2014-07-30
  • Deposition author(s): Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology (STEMCELL)

Revision History

  • 2015-02-04
    Type: Database references