4Q6T

The crystal structure of a class V chitininase from Pseudomonas fluorescens Pf-5

Structural Biology Knowledgebase: 4Q6T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.172
  • R-Value Work: 0.136

Literature

Macromolecules
Sequence Display for 4Q6T

Classification: HYDROLASE

Total Structure Weight: 38660.62

Macromolecule Entities
Molecule Chains Length Organism Details
Glycosyl hydrolase, family 18 A 351 Pseudomonas protegens Gene Name(s): PFL_1213
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.172
  • R-Value Work: 0.136
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 52.02 α = 90.00
b = 57.33 β = 90.00
c = 110.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-04-23
  • Released Date: 2014-05-07
  • Deposition author(s): Tan, K., Mack, J.C., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release