4Q5K

Crystal structure of a N-acetylmuramoyl-L-alanine amidase (BACUNI_02947) from Bacteroides uniformis ATCC 8492 at 1.30 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.149
  • R-Value Work: 0.116

Literature

Macromolecules
Sequence Display for 4Q5K

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 27400.05

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein A 240 Bacteroides uniformis Fragment: UNP residues 24-262
Gene Name(s): BACUNI_02947
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2YP
Query on 2YP

A (2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)- 3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan- 2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid
C19 H30 N2 O12
MWWQKONGFKUAEK-STFZFCBQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 49.47 α = 90.00
b = 60.93 β = 90.00
c = 80.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-04-17
  • Released Date: 2014-05-21
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • 2014-12-24
    Type: Structure summary