4PYS

The crystal structure of beta-N-acetylhexosaminidase from Bacteroides fragilis NCTC 9343

Structural Biology Knowledgebase: 4PYS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 4PYS

Classification: HYDROLASE

Total Structure Weight: 119543.66

Macromolecule Entities
Molecule Chains Length Organism Details
beta-N-acetylhexosaminidase A, B 506 Bacteroides fragilis Mutation: Y14N, S15A
Gene Name(s): BF9343_3009
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A, B FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.164
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 96.82 α = 90.00
b = 96.82 β = 90.00
c = 315.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-03-27
  • Released Date: 2014-06-18
  • Deposition author(s): Tan, K., Hatzos-Skintges, C., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release