Thermovibrio ammonificans RNase H3 in complex with 19-mer RNA/DNA
DOI:10.2210/pdb4py5/pdb   NDB ID: NA2974
Primary Citation
  •   Molecular Description Hide
    Classification: Hydrolase/dna/rna
    Structure Weight: 42990.23
    Molecule: Ribonuclease
    Polymer: 1 Type: protein Length: 271
    Chains: A
    EC#: 3.1.26   
    Mutation: ASN:78
    Organism: Thermovibrio ammonificans HB-1
    Gene Name: Theam_0945
    UniProtKB: Search PDB | E8T217   Protein Feature View
    Molecule: 5'-R(*GP*AP*GP*UP*GP*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3'
    Polymer: 2 Type: rna Length: 19
    Chains: B
    Molecule: 5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*GP*CP*AP*CP*TP*C)-3'
    Polymer: 3 Type: dna Length: 19
    Chains: C
  •   Structure Validation Hide

  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermovibrio ammonificans   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
  •   Ligand Chemical Component Hide
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  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2974
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Figiel, M.,  Nowotny, M.

    Deposition:   2014-03-26
    Release:   2014-07-30
    Last Modified (REVDAT):   2014-10-29
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    Entry title
  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.10
    R-Value: 0.186 (obs.)
    R-Free: 0.233
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 58.45 α = 90.00 
    b = 67.66 β = 90.00 
    c = 107.51 γ = 90.00