4PR9

Human Vinculin (residues 891-1066) in complex with PIP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 4PR9

Classification: CELL ADHESION STRUCTURAL PROTEIN

Total Structure Weight: 120559.11

Macromolecule Entities
Molecule Chains Length Organism Details
Vinculin A, B, C..., D, E, FA, B, C, D, E, F 176 Homo sapiens Fragment: C-terminal domain (UNP residues 891-1066 of isoform 1)
Mutation: R1060A
Gene Name(s): VCL Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PIO
Query on PIO

A, B, E [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)- 2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy- phosphoryl]oxy-propyl] octanoate
5- diphosphate, (Synonym)
C25 H49 O19 P3
XLNCEHRXXWQMPK-MJUMVPIBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B, C, F GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.204
  • Space Group: P 32 1 2

Unit Cell:

Length (Å) Angle (°)
a = 102.58 α = 90.00
b = 102.58 β = 90.00
c = 190.77 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-03-05
  • Released Date: 2014-12-10
  • Deposition author(s): Chinthalapudi, K., Rangarajan, E.S., Patil, D., Izard, T.

Revision History

  • Version 1_0: 2014-12-10

    Type: Initial release