4PF1

Crystal structure of aminopeptidase from marine sediment archaeon Thaumarchaeota archaeon

Structural Biology Knowledgebase: 4PF1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 4PF1

Classification: HYDROLASE

Total Structure Weight: 287087.28

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidase S15/CocE/NonD A, B, C, D 626 Thaumarchaeota archaeon scgc ab-539-e09 Gene Name(s): MCGE09_00221
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGE
Query on PGE

A, B, D TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 118.43 α = 90.00
b = 108.14 β = 95.08
c = 120.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-04-25
  • Released Date: 2014-06-11
  • Deposition author(s): Michalska, K., Chhor, G., Fayman, K., Endres, M., Jedrzejczak, R., Babnigg, G., Steen, A., Lloyd, K., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release