4PAG

ABC transporter solute binding protein from Sulfurospirillum deleyianum DSM 6946

Structural Biology Knowledgebase: 4PAG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.141

Literature

Macromolecules
Sequence Display for 4PAG

Classification: TRANSPORT PROTEIN

Total Structure Weight: 75730.15

Macromolecule Entities
Molecule Chains Length Organism Details
Periplasmic binding protein A, B 324 Sulfurospirillum deleyianum Gene Name(s): Sdel_2069
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MES
Query on MES

A, B 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HIS
Query on HIS

A HISTIDINE
C6 H10 N3 O2
HNDVDQJCIGZPNO-YFKPBYRVSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A, B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.141
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 83.06 α = 90.00
b = 50.81 β = 98.00
c = 91.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-04-08
  • Released Date: 2014-04-30
  • Deposition author(s): Chang, C., Endres, M., Li, H., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2017-03-22
    Type: Source and taxonomy | Details: Correct spelling of Escherichia coli
  • 2015-02-11
    Type: Source and taxonomy | Details: Correct expression host