4OVY

Crystal structure of Haloacid dehalogenase domain protein hydrolase from Planctomyces limnophilus DSM 3776


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.175
  • R-Value Work: 0.131

Literature

Macromolecules
Sequence Display for 4OVY

Classification: HYDROLASE

Total Structure Weight: 36533.21

Macromolecule Entities
Molecule Chains Length Organism Details
Haloacid dehalogenase domain protein hydrolase A 310 Planctopirus limnophila Fragment: UNP residues 24-333
Gene Name(s): Plim_1241
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.175
  • R-Value Work: 0.131
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 72.95 α = 90.00
b = 75.50 β = 90.00
c = 64.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-24
  • Released Date: 2014-02-05
  • Deposition author(s): Chang, C., Gu, M., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2015-02-25
    Type: Biological assembly | Details: Biological assembly