4OVD

Crystal structure of a putative peptidoglycan glycosyltransferase from Atopobium parvulum DSM 20469

Structural Biology Knowledgebase: 4OVD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 4OVD

Classification: TRANSFERASE

Total Structure Weight: 61521.60

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidoglycan glycosyltransferase A 564 Atopobium parvulum EC#: 2.4.1.129 IUBMB
Gene Name(s): Apar_0480
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.179
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 153.68 α = 90.00
b = 45.51 β = 102.78
c = 71.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-02-21
  • Released Date: 2014-03-12
  • Deposition author(s): Filippova, E.V., Wawrzak, Z., Kiryukhina, O., Babnigg, G., Clancy, S., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2014-08-13
    Type: Entry authorship | Details: --