4OJD

Crystal structure of a C-terminally truncated trimeric ectodomain of the C. elegans fusion protein EFF-1 G260A/D321E/D322E mutant

Structural Biology Knowledgebase: 4OJD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4OJD

Classification: MEMBRANE PROTEIN

Total Structure Weight: 60113.46

Macromolecule Entities
Molecule Chains Length Organism Details
EFF-1A H 526 Caenorhabditis elegans Fragment: C-terminally truncated ectodomain, UNP residues 23-509
Mutation: G260A, D321E, D322E
Gene Name(s): eff-1 C26D10.5 CELE_C26D10.5

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

H N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

H BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.198
  • Space Group: P 21 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 132.44 α = 90.00
b = 132.44 β = 90.00
c = 132.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-21
  • Released Date: 2014-05-14
  • Deposition author(s): Krey, T., Rey, F.A.

Revision History

No revisions since initial release