4OHW

C. Elegans Clp1 bound to ATP, and Mn2+(ATP-bound state)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 4OHW

Classification: RNA BINDING PROTEIN

Total Structure Weight: 48913.59

Macromolecule Entities
Molecule Chains Length Organism Details
Protein clpf-1 A 431 Caenorhabditis elegans Gene Name(s): clpf-1 F59A2.4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
2PE
Query on 2PE

A NONAETHYLENE GLYCOL
C18 H38 O10
YZUUTMGDONTGTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.202
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 99.34 α = 90.00
b = 99.34 β = 90.00
c = 40.80 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-18
  • Released Date: 2014-05-14
  • Deposition author(s): Dikfidan, A., Loll, B., Zeymer, C., Clausen, T., Meinhart, A.

Revision History

  • 2015-01-21
    Type: Entry title | Details: --
  • 2014-07-02
    Type: Citation | Details: Citation update