4NYZ

The EMCV 3Dpol structure with altered motif A conformation at 2.15A resolution

Structural Biology Knowledgebase: 4NYZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.229

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4NYZ

Classification: TRANSFERASE

Total Structure Weight: 52475.54

Macromolecule Entities
Molecule Chains Length Organism Details
Genome polyprotein A 460 Cardiovirus a EC#: 2.7.7.48 IUBMB 3.4.22.28 IUBMB 3.6.1.15 IUBMB
Fragment: UNP residues 1834-2293
Gene Name(s):

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GLN
Query on GLN

A GLUTAMINE
C5 H10 N2 O3
ZDXPYRJPNDTMRX-VKHMYHEASA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.229
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 122.55 α = 90.00
b = 122.55 β = 90.00
c = 198.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-12-11
  • Released Date: 2014-03-19
  • Deposition author(s): Vives-adrian, L., Lujan, C., Ferrer-orta, C., Verdaguer, N.

Revision History

  • 2014-12-10
    Type: Citation | Details: Citation update
  • 2014-03-19
    Type: Citation | Details: Citation update