Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine
DOI:10.2210/pdb4nya/pdb   NDB ID: NA2826
4NYA
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 52777.71
    Molecule: thiM TPP riboswitch
    Polymer: 1 Type: rna Length: 80
    Chains: A, B
    Organism: Escherichia coli
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct (Escherichia coli)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4NYB   Crystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamine 
    4NYC   Crystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amine 
    4NYD   Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine 
    4NYG   Crystal structure of the E. coli thiM riboswitch in complex with thiamine 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    2QB
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    2QB C6 H8 N6
    5-(azidomethyl)-2-methylpyrimidin-4-amine
    2QB:4NYA
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    GTP
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    GTP C10 H16 N5 O14 P3 G nonPolymer
    CCC
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    CCC C9 H13 N3 O10 P2 C rnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2826
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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