4NVJ

Predicting protein conformational response in prospective ligand discovery.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.155

Literature

Macromolecules
Sequence Display for 4NVJ

Classification: OXIDOREDUCTASE

Total Structure Weight: 33969.48

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome c peroxidase B 289 Saccharomyces cerevisiae Fragment: UNP RESIDUES 72-362
Mutation: P190G, W191G, ΔG260, ΔA261
Gene Name(s): SCRG_04081
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
2NX
Query on 2NX

B dimethyl benzoylphosphoramidate
C9 H12 N O4 P
IJZVLPFIUWFOFA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

B 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.155
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 51.30 α = 90.00
b = 73.08 β = 90.00
c = 104.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-12-05
  • Released Date: 2013-12-25
  • Deposition author(s): Fischer, M., Fraser, J.S.

Revision History

  • Version 1_0: 2013-12-25

    Type: Initial release

  • Version 1_1: 2015-06-24

    Type: Database references