4N97

E. coli sliding clamp in complex with 5-nitroindole

Structural Biology Knowledgebase: 4N97 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.232

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4N97

Classification: TRANSFERASE

Total Structure Weight: 81888.31

Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase III subunit beta A, B 366 Escherichia coli EC#: 2.7.7.7 IUBMB
Gene Name(s): dnaN b3701 JW3678

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2HU
Query on 2HU

A 5-nitro-1H-indole
C8 H6 N2 O2
OZFPSOBLQZPIAV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A, B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.232
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.88 α = 73.91
b = 64.78 β = 84.51
c = 72.59 γ = 84.89

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-19
  • Released Date: 2013-11-06
  • Deposition author(s): Yin, Z., Oakley, A.J.

Revision History

  • 2014-04-09
    Type: Citation | Details: Citation update
  • 2014-04-02
    Type: Citation | Details: Citation update