4N70

Pim1 Complexed with a pyridylcarboxamide

Structural Biology Knowledgebase: 4N70 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.167

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4N70

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 38054.52

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase pim-1 A 328 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: UNP residues 93-404
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2HX
Query on 2HX

A N-{4-[(3R,4R,5S)-3-amino-4-hydroxy-5-methylpiperidin- 1-yl]pyridin-3-yl}-6-(2,6-difluorophenyl)- 5-fluoropyridine-2-carboxamide
C23 H22 F3 N5 O2
ODZZYKUYGVLOTQ-ONJZCGHCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
2HX IC50: 1 nM (97) BindingDB
Ki: 0.001 nM (97) BindingDB

Ki: 0.001 nM  BindingMOAD
Ki: 0.001 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.167
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 97.95 α = 90.00
b = 97.95 β = 90.00
c = 81.08 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-14
  • Released Date: 2013-11-06
  • Deposition author(s): Bellamacina, C.R., Le, V., Shu, W., Burger, M.T., Bussiere, D.

Revision History

  • 2014-07-02
    Type: Citation | Details: Citation update