4N6Y

Pim1 Complexed with a phenylcarboxamide

Structural Biology Knowledgebase: 4N6Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.156

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4N6Y

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 37941.49

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase pim-1 A 328 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: UNP residues 93-404
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2HV
Query on 2HV

A 2-(acetylamino)-N-[2-(piperidin-1-yl)phenyl]- 1,3-thiazole-4-carboxamide
C17 H20 N4 O2 S
XPDNPGNUQDMFOW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
2HV Ki: 92 nM (97) BindingDB

N/A in BindingMoad
Ki: 92 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.156
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 97.88 α = 90.00
b = 97.88 β = 90.00
c = 80.45 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-14
  • Released Date: 2013-11-06
  • Deposition author(s): Bellamacina, C.R., Le, V., Shu, W., Burger, M.T., Bussiere, D.

Revision History

  • 2014-07-02
    Type: Citation | Details: Citation update