4N2F

Crystal structure of Protein Arginine Deiminase 2 (D169A, 0 mM Ca2+)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 4N2F

Classification: HYDROLASE

Total Structure Weight: 79240.90

Macromolecule Entities
Molecule Chains Length Organism Details
Protein-arginine deiminase type-2 A 690 Homo sapiens EC#: 3.5.3.15 IUBMB
Mutation: D169A
Gene Name(s): PADI2 Gene View KIAA0994 PAD2 PDI2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.171
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 202.78 α = 90.00
b = 51.02 β = 105.64
c = 75.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-04
  • Released Date: 2015-02-04
  • Deposition author(s): Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

Revision History

  • Version 1_0: 2015-02-04

    Type: Initial release

  • Version 1_1: 2015-05-06

    Type: Database references