4N1X

Structure of a putative peptidoglycan glycosyltransferase from Atopobium parvulum in complex with penicillin G


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 4N1X

Classification: Transferase / Antibiotic

Total Structure Weight: 99818.98

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidoglycan glycosyltransferase A, B 472 Atopobium parvulum EC#: 2.4.1.129 IUBMB
Fragment: penicillin-binding domain, UNP residues 515-954
Gene Name(s): Apar_1344
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PNM
Query on PNM

A, B OPEN FORM - PENICILLIN G
C16 H20 N2 O4 S
OGFZUTGOGYUTKZ-KWCYVHTRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.200
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 68.62 α = 90.00
b = 70.14 β = 96.39
c = 115.34 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-04
  • Released Date: 2013-10-30
  • Deposition author(s): Filippova, E.V., Minasov, G., Shuvalova, L., Kiryukhina, O., Babnigg, G., Rubin, E., Sacchettini, J., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG), Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors (MT

Revision History

  • 2014-08-13
    Type: Entry authorship | Details: --