4MX0
Shanghai N9-peramivir
- PDB DOI: https://doi.org/10.2210/pdb4MX0/pdb
- Classification: HYDROLASE
- Organism(s): Influenza A virus
- Expression System: Spodoptera frugiperda
- Mutation(s): No 
- Deposited: 2013-09-25 Released: 2013-11-20 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.206 
- R-Value Work: 0.167 
- R-Value Observed: 0.169 
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Neuraminidase | 388 | Influenza A virus | Mutation(s): 0  Gene Names: NA | ||
UniProt | |||||
Find proteins for A0A067Y7N7 (Influenza A virus) Explore A0A067Y7N7  Go to UniProtKB:  A0A067Y7N7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A067Y7N7 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 9 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G68668TB GlyCosmos:  G68668TB GlyGen:  G68668TB |
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
BCZ Query on BCZ | F [auth A] | 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-GUANIDINO-2-HYDROXY-CYCLOPENTANECARBOXYLIC ACID C15 H28 N4 O4 XRQDFNLINLXZLB-CKIKVBCHSA-N | |||
NAG Query on NAG | C [auth A], D [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CA Query on CA | E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.206 
- R-Value Work: 0.167 
- R-Value Observed: 0.169 
- Space Group: I 4 3 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 181.809 | α = 90 |
b = 181.809 | β = 90 |
c = 181.809 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
Entry History 
Deposition Data
Revision History (Full details and data files)
- Version 1.0: 2013-11-20
Type: Initial release - Version 1.1: 2013-12-18
Changes: Database references - Version 1.2: 2015-10-21
Changes: Database references, Source and taxonomy - Version 1.3: 2017-11-15
Changes: Refinement description - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary