4MV2

Crystal structure of plu4264 protein from Photorhabdus luminescens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.159
  • R-Value Work: 0.135

Literature

Macromolecules
Sequence Display for 4MV2

Classification: UNKNOWN FUNCTION

Total Structure Weight: 31275.94

Macromolecule Entities
Molecule Chains Length Organism Details
plu4264 A, B 128 Photorhabdus luminescens Gene Name(s): plu4264
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NI
Query on NI

A, B NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.159
  • R-Value Work: 0.135
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 55.74 α = 90.00
b = 147.69 β = 90.00
c = 83.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-23
  • Released Date: 2013-10-02
  • Deposition author(s): Michalska, K., Li, H., Jedrzejczak, R., Babnigg, G., Bingman, C.A., Yennamalli, R., Weerth, S., Thomas, M.G., Phillips Jr., G.N., Joachimiak, A., Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
  • Previous versions: 4I4A

Revision History

  • 2013-10-09
    Type: Source and taxonomy
  • 2014-11-12
    Type: Database references
  • 2015-02-04
    Type: Database references