4MOG

Pyranose 2-oxidase V546C mutant with 3-fluorinated glucose

• PDB DOI: https://doi.org/10.2210/pdb4MOG/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Trametes ochracea
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2013-09-12 Released: 2014-02-05 
• Deposition Author(s): Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.224 
• R-Value Work: 0.186 
• R-Value Observed: 0.187 

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 71.53 kDa 
• Atom Count: 4,993 
• Modelled Residue Count: 573 
• Deposited Residue Count: 633 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pyranose 2-oxidase	A	633	Trametes ochracea	Mutation(s): 1  Gene Names: p2o EC: 1.1.3.10
UniProt
Find proteins for Q7ZA32 (Trametes ochracea) Explore Q7ZA32  Go to UniProtKB:  Q7ZA32

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FDA	B [auth A]	DIHYDROFLAVINE-ADENINE DINUCLEOTIDE C27 H35 N9 O15 P2 YPZRHBJKEMOYQH-UYBVJOGSSA-N
G3F	C [auth A]	3-deoxy-3-fluoro-beta-D-glucopyranose C6 H11 F O5 BUMRBAMACDBPKO-AIECOIEWSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.224 
• R-Value Work: 0.186 
• R-Value Observed: 0.187 
• Space Group: P 4₂ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 102.507	α = 90
b = 102.507	β = 90
c = 128.626	γ = 90

Software Package:

Software Name	Purpose
MxCuBE	data collection
PHASER	phasing
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-02-05 
Deposition Author(s): Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

Revision History  

• Version 1.0: 2014-02-05
  Type: Initial release
  
• Version 1.1: 2018-03-07
  Changes: Data collection
• Version 1.2: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Advisory, Data collection, Database references, Derived calculations