4MHF

Crystal structure of a TRAP periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_3107), target EFI-510173, with bound alpha/beta D-Glucuronate, space group P21

Structural Biology Knowledgebase: 4MHF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Free: 0.145
  • R-Value Work: 0.117

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4MHF

Classification: TRANSPORT PROTEIN

Total Structure Weight: 37110.88

Macromolecule Entities
Molecule Chains Length Organism Details
TRAP dicarboxylate transporter, DctP subunit A 337 Polaromonas sp. js666 Gene Name(s): Bpro_3107

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BDP
Query on BDP

A BETA-D-GLUCOPYRANURONIC ACID
D-GLUCURONIC ACID (Synonym)
C6 H10 O7
AEMOLEFTQBMNLQ-QIUUJYRFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GCU
Query on GCU

A D-GLUCURONIC ACID
C6 H10 O7
AEMOLEFTQBMNLQ-WAXACMCWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Free: 0.145
  • R-Value Work: 0.117
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 45.48 α = 90.00
b = 45.96 β = 97.66
c = 63.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-29
  • Released Date: 2013-09-18
  • Deposition author(s): Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Zhao, S., Stead, M., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

Revision History

  • 2015-02-25
    Type: Citation | Details: Citation update