4MDW

Crystal structure of a DUF1541 family protein (ydhK) from Bacillus subtilis subsp. subtilis str. 168 at 2.00 A resolution

Structural Biology Knowledgebase: 4MDW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 4MDW

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 18783.95

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein YdhK A 166 Bacillus subtilis Fragment: UNP residues 41-205
Gene Name(s): ydhK BSU05790
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MLY
Query on MLY
A L-PEPTIDE LINKING C8 H18 N2 O2 LYS
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 27.69 α = 90.00
b = 64.17 β = 90.00
c = 80.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-23
  • Released Date: 2013-10-02
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • 2014-12-24
    Type: Entry title | Details: --