4MCJ

Crystal structure of a putative nucleoside deoxyribosyltransferase (BDI_0649) from Parabacteroides distasonis ATCC 8503 at 2.40 A resolution

Structural Biology Knowledgebase: 4MCJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 4MCJ

Classification: TRANSFERASE

Total Structure Weight: 182208.25

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein A, B, C..., D, E, F, G, H, I, JA, B, C, D, E, F, G, H, I, J 154 Parabacteroides distasonis Gene Name(s): BDI_0649
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, B, C, D, F, G, H, I, J CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F, G, H, I, J L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 323.85 α = 90.00
b = 65.63 β = 90.48
c = 102.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-21
  • Released Date: 2013-09-04
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • 2014-12-24
    Type: Entry title | Details: --