4M9Q

Crystal structure of C-terminally truncated Arl13B from Chlamydomonas rheinhardtii bound to GppNHp

Structural Biology Knowledgebase: 4M9Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4M9Q

Classification: HYDROLASE

Total Structure Weight: 79485.29

Macromolecule Entities
Molecule Chains Length Organism Details
ARF-like GTPase A, B, C 227 Chlamydomonas reinhardtii EC#: 3.6.5.2 IUBMB
Fragment: UNP residues 18-242
Gene Name(s): ARL13 CHLREDRAFT_195529
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GNP
Query on GNP

A, B, C PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
C10 H17 N6 O13 P3
UQABYHGXWYXDTK-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.190
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.05 α = 90.00
b = 76.83 β = 90.00
c = 172.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-15
  • Released Date: 2013-11-06
  • Deposition author(s): Miertzschke, M., Koerner, C., Spoerner, M., Wittinghofer, A.

Revision History

  • 2014-04-09
    Type: Experimental method | Details: updated beamline name
  • 2014-01-15
    Type: Citation | Details: Citation update
  • 2013-11-13
    Type: Citation | Details: Citation update