4M8I

1.43 Angstrom resolution crystal structure of cell division protein FtsZ (ftsZ) from Staphylococcus epidermidis RP62A in complex with GDP

• PDB DOI: https://doi.org/10.2210/pdb4M8I/pdb

• Classification: CELL CYCLE
• Organism(s): Staphylococcus epidermidis RP62A
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2013-08-13 Released: 2013-09-04 
• Deposition Author(s): Halavaty, A.S., Minasov, G., Winsor, J., Dubrovska, I., Filippova, E.V., Olsen, D.B., Therien, A., Shuvalova, L., Young, K., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.43 Å
• R-Value Free: 0.206 
• R-Value Work: 0.169 
• R-Value Observed: 0.171 

Literature

1.43 Angstrom resolution crystal structure of cell division protein FtsZ (ftsZ) from Staphylococcus epidermidis RP62A in complex with GDP

Halavaty, A.S., Minasov, G., Winsor, J., Dubrovska, I., Filippova, E.V., Olsen, D.B., Therien, A., Shuvalova, L., Young, K., Anderson, W.F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 42.82 kDa 
• Atom Count: 2,832 
• Modelled Residue Count: 311 
• Deposited Residue Count: 400 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cell division protein FtsZ	A	400	Staphylococcus epidermidis RP62A	Mutation(s): 0  Gene Names: ftsZ, SERP0751
UniProt
Find proteins for Q5HQ06 (Staphylococcus epidermidis (strain ATCC 35984 / RP62A)) Explore Q5HQ06  Go to UniProtKB:  Q5HQ06

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GDP	B [auth A]	GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N
SO4	C [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.43 Å
• R-Value Free: 0.206 
• R-Value Work: 0.169 
• R-Value Observed: 0.171 
• Space Group: C 1 2 1
• Diffraction Data: https://doi.org/10.18430/M34M8I

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.335	α = 90
b = 52.063	β = 109.64
c = 87.005	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-09-04 
Deposition Author(s): Halavaty, A.S., Minasov, G., Winsor, J., Dubrovska, I., Filippova, E.V., Olsen, D.B., Therien, A., Shuvalova, L., Young, K., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2013-09-04
  Type: Initial release
  
• Version 1.1: 2013-09-18
  Changes: Advisory
• Version 1.2: 2017-11-15
  Changes: Refinement description
• Version 1.3: 2023-09-20
  Changes: Data collection, Database references, Derived calculations, Refinement description