4M88

Crystal structure of extracellular ligand-binding receptor from Verminephrobacter eiseniae ef01-2

Structural Biology Knowledgebase: 4M88 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.172

Literature

Macromolecules
Sequence Display for 4M88

Classification: TRANSPORT PROTEIN

Total Structure Weight: 38167.50

Macromolecule Entities
Molecule Chains Length Organism Details
Extracellular ligand-binding receptor A 357 Verminephrobacter eiseniae Fragment: SUBSTRATE BINDING PROTEIN (AMINO ACID)
Gene Name(s): Veis_2660
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.172
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 36.08 α = 90.00
b = 95.81 β = 111.56
c = 50.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-13
  • Released Date: 2013-11-06
  • Deposition author(s): Wu, R., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics, Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2013-12-18
    Type: Entry authorship | Details: --
  • 2013-12-04
    Type: Data collection | Details: --