4M7A

Crystal structure of Lsm2-8 complex bound to the 3' end sequence of U6 snRNA

Structural Biology Knowledgebase: 4M7A SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.78 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.245

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4M7A

Classification: RNA BINDING PROTEIN

Total Structure Weight: 155655.78


Macromolecule Entities
Molecule Chains Length Organism Details
U6 snRNA-associated Sm-like protein LSm8 A, H 96 Saccharomyces cerevisiae Mutation: K17L, C22S, I38L, C51S
Gene Name(s): LSM8 Gene View YJR022W J1464 YJR83.16
U6 snRNA-associated Sm-like protein LSm2 B, I 95 Saccharomyces cerevisiae Mutation: C45S
Gene Name(s): LSM2 Gene View SMX5 SNP3 YBL026W YBL0425
U6 snRNA-associated Sm-like protein LSm3 C, J 89 Saccharomyces cerevisiae Mutation: C37S, C63S
Gene Name(s): LSM3 Gene View SMX4 USS2 YLR438C-A
U6 snRNA-associated Sm-like protein LSm6 D, K 86 Saccharomyces cerevisiae Gene Name(s): LSM6 Gene View YDR378C D9481.18
U6 snRNA-associated Sm-like protein LSm5 E, L 93 Saccharomyces cerevisiae Gene Name(s): LSM5 Gene View YER146W
U6 snRNA-associated Sm-like protein LSm7 F, M 115 Saccharomyces cerevisiae Gene Name(s): LSM7 Gene View YNL147W N1202 N1780
U6 snRNA-associated Sm-like protein LSm4 G, N 93 Saccharomyces cerevisiae Gene Name(s): LSM4 Gene View SDB23 USS1 YER112W
Macromolecule Entities
Molecule Chains Length Organism Details
U6 snRNA O, P 8 synthetic


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.78 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.245
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 117.62 α = 90.00
b = 78.38 β = 100.58
c = 140.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-12
  • Released Date: 2013-11-13
  • Deposition author(s): Zhou, L., Hang, J., Zhou, Y., Wan, R., Lu, G., Yan, C., Shi, Y.

Revision History

  • 2014-02-19
    Type: Citation | Details: Citation update
  • 2013-12-11
    Type: Citation | Details: Citation update