4M6G

Structure of the Mycobacterium tuberculosis peptidoglycan amidase Rv3717 in complex with L-Alanine-iso-D-Glutamine reaction product

Structural Biology Knowledgebase: 4M6G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.206

Literature

Macromolecules
Sequence Display for 4M6G

Classification: HYDROLASE

Total Structure Weight: 23780.34

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidoglycan Amidase Rv3717 A 225 Mycobacterium tuberculosis EC#: 3.5 IUBMB
Fragment: UNP residues 20-241
Gene Name(s): MT3820
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
L-alanine-iso-D-glutamine B 2 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ZGL
Query on ZGL
B D-peptide linking C5 H10 N2 O3 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.206
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 55.98 α = 90.00
b = 75.96 β = 90.00
c = 49.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-09
  • Released Date: 2013-09-18
  • Deposition author(s): Prigozhin, D.M., Mavrici, D., Huizar, J.P., Vansell, H.J., Alber, T., TB Structural Genomics Consortium (TBSGC)

Revision History

  • 2013-11-20
    Type: Citation | Details: Citation update
  • 2013-09-25
    Type: Citation | Details: Citation update