4M6E

The high resolution structure of tyrocidine A reveals an amphipathic dimer

Structural Biology Knowledgebase: 4M6E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.95 Å
  • R-Value Free: 0.142
  • R-Value Work: 0.134

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4M6E

Classification: ANTIBIOTIC

Total Structure Weight: 1502.81

Macromolecule Entities
Molecule Chains Length Organism Details
tyrocidine A A 10 Brevibacillus brevis

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MOH
Query on MOH

A METHANOL
C H4 O
OKKJLVBELUTLKV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_001142 (ORN,PHE,GLN,TYR,VAL,DPN,PRO,ASN,LEU) A tyrocidine A Peptide-like /
Antibiotic
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.95 Å
  • R-Value Free: 0.142
  • R-Value Work: 0.134
  • Space Group: H 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 33.39 α = 90.00
b = 33.39 β = 90.00
c = 50.57 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-09
  • Released Date: 2014-03-19
  • Deposition author(s): Loll, P.J., Economou, N.J., Nahoum, V.

Revision History

No revisions since initial release