4LSV

Crystal structure of broadly and potently neutralizing antibody 3BNC117 in complex with HIV-1 clade C C1086 gp120


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.260

Literature

Macromolecules
Sequence Display for 4LSV

Classification: viral protein / immune system

Total Structure Weight: 89937.89

Macromolecule Entities
Molecule Chains Length Organism Details
envelope glycoprotein GP120 G 358 Human immunodeficiency virus 1 Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HEAVY CHAIN OF ANTIBODY 3BNC117 H 226 Homo sapiens
LIGHT CHAIN OF ANTIBODY 3BNC117 L 206 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

G, L N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IMD
Query on IMD

L IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.260
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 191.62 α = 90.00
b = 191.62 β = 90.00
c = 103.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-23
  • Released Date: 2013-08-21
  • Deposition author(s): Zhou, T., Moquin, S., Kwong, P.D.

Revision History

  • 2014-05-07
    Type: Other | Details: related entry
  • 2013-09-25
    Type: Citation | Details: Citation update
  • 2013-09-04
    Type: Citation | Details: Citation update