4LGT

Crystal structure of the catalytic domain of RluB in complex with a 21-nucleotide RNA substrate

Structural Biology Knowledgebase: 4LGT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.173

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LGT

Classification: ISOMERASE / RNA

Total Structure Weight: 70858.01


Macromolecule Entities
Molecule Chains Length Organism Details
Ribosomal large subunit pseudouridine synthase B A, D 255 Escherichia coli EC#: 5.4.99.22 IUBMB
Fragment: UNP residues 1-251
Gene Name(s): rluB yciL b1269 JW1261
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
stem-loop of 23S rRNA E, F 21 synthetic

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
OCS
Query on OCS
A, D L-PEPTIDE LINKING C3 H7 N O5 S CYS
FHU
Query on FHU
E, F RNA LINKING C9 H14 F N2 O10 P U

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.173
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 80.94 α = 90.00
b = 42.20 β = 102.61
c = 169.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-28
  • Released Date: 2013-11-20
  • Deposition author(s): Czudnochowski, N., Finer-Moore, J.S., Stroud, R.M.

Revision History

  • 2014-02-26
    Type: Citation | Details: Citation update